Welcome to T3/Wheat
T3 is a repository for public wheat data generated by the Wheat Coordinated Agricultural Project (Wheat CAP). It also contains data from the US Uniform Regional Scab Nurseries, supported by the US Wheat and Barley Scab Initiative (USWBSI). Funding is provided by the National Institute for Food and Agriculture (NIFA) and the United States Department of Agriculture (USDA). The current project is funded through NIFA's International Wheat Yield Partnership (IWYP) and part of the Agriculture and Food Research Initiative (AFRI). The database was developed at triticeaetoolbox.org/wheat. That website was archived in Jan 2020 and all the data was moved to this current site.
Data Usage Policy
The data on this database is shared according to the Toronto agreement.
Click here to view the full data usage policy.
Citation
If data on The Triticeae Toolbox was relevant to analyses or findings that you publish, please cite:
If data on The Triticeae Toolbox was relevant to analyses or findings that you publish, please cite:
If you have data to publish in our database, please submit the data using wheat-sandbox.
We're collecing names and emails of those that are interested in attending future T3/Breedbase workshops on various topics such as using Android Field Book, Seedlots, Barcodes, or any other topic you may be interested in learning more about. Fill out the Virual Workshop Interest Form if you may be interested in attending a future workshop. Once we have enough interest in a particular topic, we'll reach out to everyone to schedule a date.
Scab Forum Presentation
Dec 5, 2022
The presentation of T3/Breedbase given at the 2022 Wheat & Barley Scab Forum can be found here. It includes information about the main features of T3/Breedbase, a general overview of creating phenotype upload templates, and highlights some of T3/Breedbase's advanced features (such as Seedlots and Barcodes).
Genotype projects added
March 1, 2021
Site update
November 1, 2020 SGN-285.0
Analysis
Manage (contact us to use these features)
Breedbase Workshop Notes & Videos
September 10, 2020
T3 hosted a practical remote workshop demonstrating the process of uploading field trial data to the database. Notes from that workshop, which include step-by-step instructions on how to upload a sample dataset, are now available.
Video recordings of the workshop are available on the Breedbase YouTube Channel.
Loci and Genes
August 2020
UniProt release April 2020 loaded in Loci & Genes
EnsemblPlant release August 2020 loaded in Genome Features
Scab Forum Presentation
Dec 9, 2019
The presentation (with step-by-step screenshots of the demos) of T3/Breedbase given at the 2019 Wheat & Barley Scab Forum can be found here.
T3 Phenotype Data Loaded
Nov 29, 2019
2456 Phenotype trials and mean data loaded from T3.
Analyze, Selection Index
The Selection Index determines rankings of accessions based on more than one trait
Analyze, Summarize Trials
Summarize Trials shows Least squares mean values in selected Trials
Search, Loci & Genes
Search Loci & Genes allows you to search for genetic characters and associated accessions
Blank Upload Templates
Below are blank upload templates for each data type.
Example Templates
Below are example templates generated for demo wheat trials from a 2020 workshop. You can use these files to see how the templates are properly formatted.
Submission
Use the Phenotype Submission Form to submit your data to the curators for inclusion in T3/Wheat.
For more detailed instructions, see the Detailed Phenotype Upload Instructions
Explore T3/Wheat
To view most of the data on T3/Wheat, you'll first need to create a free account.
Login
If you already have an account, login to get full access.
Use the Quick Search to find an Accession, Trial, Trait, etc by name:
Use the Search Wizard to explore the database or search individual data types:
Explore Experiments in the Search Wizard:
You must first log in to view the lists of experiments...
Submit Phenotype Data
Phenotype data can be submitted to T3/Wheat in two ways:
Submitting files directly to us
If you have upload templates that you think are properly formatted or data files that are not formatted as upload templates, you can submit the files directly to use for inclusion in the production site by submitting them to us through the Phenotype Submission Form.
Phenotype Submission FormUsing the Sandbox
When using the sandbox, you create upload templates that contain the trial information. Then, you upload those templates to the Sandbox to check for any errors. When the trial has been successfully added you can use the Submit Trial function to submit the trial directly to us for inclusion in the production site. Visit the T3/Wheat Sandbox for more information.
Visit the T3/Wheat SandboxSubmit Genotype Data
Please Contact Us if you have genotype data you would like to submit to T3/Wheat.
User Guides
New to T3/Wheat?
View the comprehensive Documentation from the Breedbase team to learn about available features or watch the detailed Video Tutorials.
T3/Wheat is open source software and available under the MIT License and may be downloaded from GitHub.
Working
