T3/Wheat

box_id	seed_id	inventory_date	inventory_person	weight_gram

seedlot_name	accession_name	operator_name	amount	weight_gram	description	box_name	quality	source

seedlot_name	cross_unique_id	operator_name	amount	weight_gram	description	box_name	quality

accession_name	species_name	population_name	organization_name	synonym	PUI	accession number	color	country of origin	filial generation	growth habit	hardness	notes	purdy pedigree	variety	female_parent	male_parent	cross_type

Intro
Crossing Experiment
Enter cross information
Enter parentage information
Additional cross info

What is a cross?
- The Cross Tool can track any pollinations in a breeding program.
- Each cross has a globally unique cross id.
- Supported cross types are: biparental, self, open, backcross, sib, polycross, bulk, bulk_self, bulk_open, doubled_haploid, or dihaploid_induction
- For an open pollinated cross, the cross can be defined as between female accession A and male population P1 (populations in the database are defined strictly as groups of accessions). If the male parent is not known, it can be left blank.
- For backcross cross type, cross unique id can be used as one of the parents.
- An individual cross can be linked to the specific female plot or plant, as well as to the specific male plot or plant.
- A cross can have other data associated to it, such as number of flowers, pollination date, etc.
- Seed produced by a cross can be managed using a seedlot.
- Progenies from a cross can become named accessions in the database.
Select a crossing experiment

Crossing experiments are for grouping crosses together. The grouping is most often done for crosses derived from the same field trial, the same year, or for crosses that have the same breeding objective.

Enter basic information about the cross

Cross type information
Descriptions of cross types

Breeding Program:

Crossing Experiment:

Cross Unique ID:

Cross Combination (optional):

Cross Type:

Enter basic information about the cross

Female Parent:

Male Parent:

Selfed Parent:

Female Parent:

Male Population: (optional)

Female Population:

Male Parent:

Selfed Population:

Female Population:

Male Population: (optional)

Doubled Haploid Parent:

Dihaploid induction Parent:

Accessions to use in Polycross:

Accessions to use in Reciprocal cross:

Multicross Female Parents:

Multicross Male Parents:

Optional: If you choose to record exact cross parents, you can do so.

Field Trial:

Female Plot:

Male Plot:

If you would like to add auto-generated progeny names for this cross, you can add it here

Optional:

Add New Accessions for Progeny:	Number of progeny:
Use Prefix and/or Suffix:	Prefix: Suffix:

Finished! Your cross is now in the database

The cross was added successfully

You may want to proceed to the cross detail page for the cross you just created.
You can print barcodes for the cross.
You can add crossing information as it becomes available (e.g. number of seeds, progeny, etc).

Finished! Your cross is now in the database

The cross was added successfully

You may want to proceed to the cross detail page for the cross you just created.
You can print barcodes for the cross.
You can add crossing information as it becomes available (e.g. number of seeds, progeny, etc).

Intro
Add a crossing experiment

What are crossing experiments?

Crossing experiments group crosses. The grouping can reflect crosses done in the same field trial, crosses in a breeding program in a given year, or crosses that have the same breeding objective. This grouping can be used to encapsulate all the crosses done in a crossing block field trial that you have saved in the database (e.g. in Manage Trials your crossing block will appear as a field trial with plots)
Enter basic information about the crossing experiment

Crossing Experiment Name:

Breeding Program:

Location of crossing experiment:

Year:

Description:

Finished! Your crossing experiment is now in the database

Crossing experiment was added successfully

You may want to proceed to the crossing experiment detail page you just created.
You can add or upload crosses into your crossing experiment as they become available.
You can add crossing information as it becomes available (e.g. number of seeds, progeny, etc).

Finished! Your crossing experiment is now in the database

Crossing experiment was added successfully

You may want to proceed to the crossing experiment detail page you just created.
You can add or upload crosses into your crossing experiment as they become available.
You can add crossing information as it becomes available (e.g. number of seeds, progeny, etc).

Intro
Select Trial
Select Seedlots
Name Seedlots
Set Contents
Set Metadata
Confirm
Create

Introduction

This workflow will guide you through the process of creating seedlots from the accessions in a field trial. You can create one new seedlot for each plot or unique accession in the trial. You can also set the initial contents (count or weight) of the seedlot as the value of a recorded trait from the trial.
Select a Field Trial

Enter the name of the field trial from which to create the seedlots:

Trial:
Select Seedlots

Seedlots can be generated from either each accession or plot or subplot or plant in this trial.
- If you select accessions: seedlots will be created
- If you select plots: seedlots will be created
- If you select subplots: seedlots will be created
- If you select plants: seedlots will be created
Name Seedlots

Enter a template for naming each new seedlot. The following variables (surrounded by curly braces) can be used in the template and the value of that variable will be replaced.
- trial_name
- accession_name
- plot_name
- plot_number
- rep
- block
- subplot_name
- subplot_index
- plant_name
- plant_index
- index - an incrementing index number, starting with 1
Name Template:

Seedlot Names

Set Seedlot Contents

Each seedlot needs to have its initial contents (either a count or a weight) set. You can either set the same initial value for each seedlot, use the value from one of the traits recorded for this trial, or compute a new value from the recorded traits for this trial. If you are creating a seedlot for each accession and select a trait or a computed value as their initial value, then the sum of the trait values for each of the accession's plots will be used. The contents of each seedlot can be modified in the table below before its creation.

Contents Type:

Contents Value:

Constant:

Trait:

Trait Variables:

Use the following variables as substitutions for the trait values to compute a new value for the initial seedlot contents. If you are creating one seedlot per plot, then the single plot trait value will be used in the computation. If you are creating one seedlot per accession, then the sum of the trait values for each plot of that accession will be used in the computation.

Variable	Trait

Contents Formula:

NOTE: The formula is evaluated using javascript, so any basic operators (+-*/) or javascript Math functions (Math.abs(x)) can be used.

Seedlot Contents

Set Seedlot Metadata

The following metadata is required for each seedlot. Fill out the form at the top apply the metadata to all of the seedlots. Then, each seedlot can be manually modified in the table below.

Breeding Program:

Location:

Box Name:

Quality Issues:

Organization:

Timestamp:

Description:

Seedlot Metadata
Confirm Seedlots

Confirm the attributes for the new seedlots in the table below. If something is incorrect, navigate to the previous step and correct the information. Once all the information is correct, continue to the next step to create the seedlots.

Seedlots to Create
Create Seedlots

Creating Seedlots...

70% Complete

Seedlot Progress

Complete!

Transactions may be uploaded in an Excel file (.xls or .xlsx)
Header:
The first row (header) must contain the following:

from_seedlot_name	to_seedlot_name	amount	weight(g)	operator_name	transaction_description

Required fields:

from_seedlot_name: Must exist in the database. Seeds were taken from this seedlot.
to_seedlot_name: Must exist in the database. Seeds were added to this seedlot.
amount: Number of seeds being transaferred. Can be provided in conjunction with weight(g). Must provide a value for amount or weight(g) or both.
AND/OR
weight(g): Weight in grams of seedlot being transferred. Can be provided in conjunction with amount. Must provide a value for amount or weight(g) or both.
operator_name: Name of the person who oversaw the transaction process. Can be any name.

Optional fields:

transaction_description: Information about why this transaction is processed.

Transactions may be uploaded in an Excel file (.xls or .xlsx)
Header:
The first row (header) must contain the following:

from_seedlot_name	amount	weight(g)	operator_name	transaction_description	to_new_seedlot_name	new_seedlot_box_name	new_seedlot_description	new_seedlot_quality

Required fields:

from_seedlot_name: Must exist in the database. Seeds were taken from this seedlot.
amount: Number of seeds being transaferred. Can be provided in conjunction with weight(g). Must provide a value for amount or weight(g) or both.
AND/OR
weight(g): Weight in grams of seedlot being transferred. Can be provided in conjunction with amount. Must provide a value for amount or weight(g) or both.
operator_name: Name of the person who oversaw the transaction process. Can be any name.
to_new_seedlot_name: Must NOT exist in the database. New seedlot will be created using amount/weight of seeeds from existing seedlot.
new_seedlot_box_name: Box name that this new seedlot is stored. Can be any name.

Optional fields:

transaction_description: Information about why this transaction is processed.
new_seedlot_description: Information about this new seedlot.
new_seedlot_quality: Status or condition of the seedlot, for example "ok", "moldy", "insect damage" etc.

Transactions may be uploaded in an Excel file (.xls or .xlsx)
Header:
The first row (header) must contain the following:

from_seedlot_name	to_plot_name	amount	weight(g)	operator_name	transaction_description

Required fields:

from_seedlot_name: Must exist in the database. Seeds were taken from this seedlot.
to_plot_name: Must exist in the database. Seeds were used for this plot. You can also record seedlot used for each plot during uploading existing trial on the Manage Trials page
amount: Number of seeds being transaferred. Can be provided in conjunction with weight(g). Must provide a value for amount or weight(g) or both.
AND/OR
weight(g): Weight in grams of seedlot being transferred. Can be provided in conjunction with amount. Must provide a value for amount or weight(g) or both.
operator_name: Name of the person who oversaw the transaction process. Can be any name.

Optional fields:

transaction_description: Information about why this transaction is processed.

Transactions may be uploaded in an Excel file (.xls or .xlsx)
Header:
The first row (header) must contain the following:

from_seedlot_name	amount	weight(g)	operator_name	transaction_description

Required fields:

from_seedlot_name: Must exist in the database. Seeds were taken from this seedlot.
amount: Number of seeds being transaferred. Can be provided in conjunction with weight(g). Must provide a value for amount or weight(g) or both.
AND/OR
weight(g): Weight in grams of seedlot being transferred. Can be provided in conjunction with amount. Must provide a value for amount or weight(g) or both.
operator_name: Name of the person who oversaw the transaction process. Can be any name.
transaction_description: Information about why this transaction is processed.

Intro
Add New Transactions

Seedlot Transactions

There are four different types of seedlot transactions: Transferring seeds from an existing seedlot to another existing seedlot, to a new seedlot, to a plot or to unspecified seedlot or plot.
- You can use upload option for all transaction types
- Seedlot list option can be used only for transferring seeds from existing seedlots to unspecified seedlots/plots.
Enter information about the transactions
Note: This option is for transferring seeds to unspecified seedlots/plots only

Unit Type:

List of Seedlots:

Finished! Your seedlot transactions were stored

New seedlot transactions were added successfully

Finished! Your seedlot transactions were stored

New seedlot transactions were added successfully

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

Notice

Before creating a new account, please check if you already have an account using the directory search.
A link will be emailed to you. Please click on it to activate the account.
All fields are required.

First Name:

Last Name:

Breeding Program(s):

Username:

Username must be at least 7 characters long.

Password:

Password must be at least 7 characters long and different from your username.

Confirm Password:

Password must be at least 7 characters long and different from your username.

Email Address:

An email will be sent to this address requiring you to confirm its receipt to activate your account.

Available Seedlots

Create Seedlots from a Trial

Introduction

Select a Field Trial

Select Seedlots

Name Seedlots

Seedlot Names

Set Seedlot Contents

Seedlot Contents

Set Seedlot Metadata

Seedlot Metadata

Confirm Seedlots

Seedlots to Create

Create Seedlots

Seedlot Progress

You want to transfer seeds from existing seedlots to other existing seedlots

Please provide basic information about the new seedlots and upload your file

You want to use seeds from existing seedlots for plots

You want to remove seeds from existing seedlots to unspefified seedlots/plots

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